Here's how I use to do it. On this car, the back area of the roof is what you really need to pay attention to. Use a nice mat or towel to cover the area when loading/unloading. Thule makes a great mat for this purpose. Never had any issues with the paint but if you're concerned maybe try something to buffer in between (microfiber towel?)
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”The beauty of the Second Amendment is that it will not be needed until they try to take it.”
~Thomas Jefferson.........maybe